The software matrix below itemizes the various packages which are available on William and Mary's SciClone cluster, organized by subcluster. Many other standard utilities are included in the RHEL/CentOS operating system distributions; with a few exceptions, those are not listed here, nor are application packages which are maintained independently by users or departments.
If you need a package that is not listed here, or would like to have a listed package installed on additional subclusters, please submit a Software Request via the HPC Help Desk or send an email to hpc-help@wm.edu .
To facilitate locating the software that you need, the table can be sorted on any column by clicking on the column heading. The following keys identify the various subclusters, compiler suites, and categories that are listed in the table.
Subclusters:
| bo/hi | - | Bora & Hima |
| vx | - | Vortex & Vortex Alpha |
| hu/ww | - | Hurricane & Whirlwind |
| st | - | Storm (Hail, Ice & Wind) |
| mlt | - | Meltemi |
| pt | - | Potomac |
| pm | - | Pamunkey |
Python Info:
Please see this separate page which discusses the various distributions of Python on the cluster.Compiler Key:
| GCC | - | GNU Compiler Suite |
| PGI | - | Portland Group Compilers |
| Intel | - | Intel Compiler Suite |
Category Key:
| Bio | - | Computational biology and bioinformatics |
| Database | - | Database software |
| Data Mgmt | - | Data management software |
| Developer | - | Programming languages, compilers, and code development tools |
| Doc | - | Documentation systems and text processing tools |
| Geo | - | Geospatial and GIS libraries and programming environments |
| Graphics | - | Graphics libraries and toolkits |
| Lib | - | Library |
| MPI | - | MPI software |
| MathLib | - | Math Library |
| MathStat | - | Math and/or statistics software |
| Misc | - | General-purpose utilities and miscellaneous software |
| ModSim | - | modeling and simulation packages, including many discipline-specific applications |
| Optimization | - | Model Optimization software |
| Python | - | Python related software |
| System | - | Job schedulers and other system resource management and monitoring tools |
| UI | - | User interface libraries and toolkits |
| Name | URL | Module | Compiler | Category | bo/hi | hu/ww | st | vx | mlt | pt | pm |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Abinit v 7.10.5, Condensed matter physics software | Abinit homepage | abinit/7.10.5 | GNU | ModSim | X | ||||||
| ACML 5.1.0 (AMD Core Math Library) | ACML 5.1.0 guide | acml/5.1.0/gcc | GNU | MathLib | X | ||||||
| ACML 5.1.0 (AMD Core Math Library) | ACML 5.1.0 guide | acml/5.1.0/pgi | PGI | MathLib | X | ||||||
| ACML 5.1.0 multi-threaded (AMD Core Math Library) | ACML 5.1.0 guide | acml-mp/5.1.0/gcc | GNU | MathLib | X | ||||||
| ACML 5.1.0 multi-threaded (AMD Core Math Library) | ACML 5.1.0 guide | acml-mp/5.1.0/pgi | PGI | MathLib | X | ||||||
| ACML 5.1.0 multi-threaded w/64bit integers (AMD Core Math Library) | ACML 5.1.0 guide | acml-mp-int64/5.1.0/gcc | GNU | MathLib | X | ||||||
| ACML 5.1.0 multi-threaded w/64bit integers (AMD Core Math Library) | ACML 5.1.0 guide | acml-mp-int64/5.1.0/pgi | PGI | MathLib | X | ||||||
| ACML 5.1.0 w/64bit integers (AMD Core Math Library) | ACML 5.1.0 guide | acml-int64/5.1.0/gcc | GNU | MathLib | X | ||||||
| ACML 5.1.0 w/64bit integers (AMD Core Math Library) | ACML 5.1.0 guide | acml-int64/5.1.0/pgi | PGI | MathLib | X | ||||||
| ACML 5.3.1 (AMD Core Math Library) | ACML 5.3.1 guide | acml/5.3.1/gcc | GNU | MathLib | X | X | X | ||||
| ACML 5.3.1 (AMD Core Math Library) | ACML 5.3.1 guide | acml/5.3.1/pgi | PGI | MathLib | X | X | X | ||||
| ACML 5.3.1 multi-threaded (AMD Core Math Library) | ACML 5.3.1 guide | acml-mp/5.3.1/gcc | GNU | MathLib | X | X | X | ||||
| ACML 5.3.1 multi-threaded (AMD Core Math Library) | ACML 5.3.1 guide | acml-mp/5.3.1/pgi | PGI | MathLib | X | X | X | ||||
| ACML 5.3.1 multi-threaded w/64bit integers (AMD Core Math Library) | ACML 5.3.1 guide | acml-mp-int64/5.3.1/gcc | GNU | MathLib | X | X | X | ||||
| ACML 5.3.1 multi-threaded w/64bit integers (AMD Core Math Library) | ACML 5.3.1 guide | acml-mp-int64/5.3.1/pgi | PGI | MathLib | X | X | X | ||||
| ACML 5.3.1 w/64bit integers (AMD Core Math Library) | ACML 5.3.1 guide | acml-int64/5.3.1/gcc | GNU | MathLib | X | X | X | ||||
| ACML 5.3.1 w/64bit integers (AMD Core Math Library) | ACML 5.3.1 guide | acml-int64/5.3.1/pgi | PGI | MathLib | X | X | X | ||||
| ACML 6.1.0 multi-threaded (AMD Core Math Library) | ACML 6.1.0 guide | acml-mp/6.1.0/gcc | GNU | MathLib | X | ||||||
| Allpaths-lg v 47017, Short read genome assembler | Allpaths-lg manual page | allpathslg/47017/gcc | GNU | Bio | X | ||||||
| Allpaths-lg v 52488, Short read genome assembler | Allpaths-lg manual page | allpathslg/52488 | GNU | Bio | X | ||||||
| AMD APP SDK v 2.9-1, AMD development SDK (only available on ice nodes) | AMD APP SDK guide | amdappsdk/2.9-1 | GNU | ModSim | X | ||||||
| AMOS v. 3.1.0, A modular open-source assembler | AMOS wiki | amos/3.1.0/gcc | GNU | Bio | X | ||||||
| AMOS v. 3.1.0, A modular open-source assembler | AMOS wiki | amos/3.1.0 | GNU | Bio | X | ||||||
| AMPL optimization software v. 201011025 | AMPL homepage | ampl/20101125 | Optimization | X | X | ||||||
| AMPL optimization software v. 201011025 | AMPL homepage | ampl/20101125 | GNU | Optimization | X | ||||||
| Anaconda v2.3.0 python distribution (python 2.7.10) Python info | Anaconda 2.3.0 package list | anaconda/2.3.0 | GNU | Python | X | ||||||
| Anaconda v4.4.0 python distribution (python 2.7.13) Python info | Anaconda 4 documentation | anaconda/2.7/4.4.0 | GNU | Python | X | ||||||
| Anaconda v4.4.0 python distribution (python 3.6.1)Python info | Anaconda 4 documentation | anaconda/3.6/4.4.0 | GNU | Python | X | X | |||||
| Anaconda v4.4.0 python distribution (python 3.6.1)Python info | Anaconda 4 documentation | anaconda3/4.4.0 | GNU | Python | X | ||||||
| Arpack v 96 - Arnoldi Method distributed parallel eigenvector software | ARPACK 96 homepage | arpack/96/gcc | GNU | MathStat | X | ||||||
| Arpack v 96 - Arnoldi Method distributed parallel eigenvector software | ARPACK 96 homepage | arpack/96/pgi | PGI | MathStat | X | ||||||
| Automatic Differentiation Model Builder v 11.2b | AMDB manuals page | admb/11.2b/gcc | GNU | ModSim | X | X | |||||
| AWS v 1.11.170, Amazon web services command-line interface | AWS CLI documentation | aws/1.11.170 | GNU | Misc | X | X | |||||
| BCFtools v 1.5-32, utility for manipulating bcf and vcf files | BCFtools documentation | bcftools/1.5-32 | GNU | Bio | X | ||||||
| Bedtools v 2.17.0 utility for genomic manipulations | Bedtools documentation | bedtools/2.17.0 | GNU | Bio | X | ||||||
| Bioinformatics programs (pamaunkey sub-cluster at VIMS) | Bioinformatics programs page | bio-informatic/20160426 | GNU | Bio | X | ||||||
| Blasr v 20170925, the Pacific Biosciences long read aligner | Blasr wiki | blasr/20170925 | GNU | Bio | X | ||||||
| Blat v 2013, UCSC sequence aligner | Blat homepage | blat/2013 | GNU | Bio | X | ||||||
| Boost v 1.59.0, C++ libraries | Boost 1.59.0 documentation | boost/1.59.0/gcc-4.8.4 | GNU | Developer | X | X | |||||
| Boost v 1.59.0, C++ libraries | Boost 1.59.0 documentation | boost/1.59.0/gcc-4.8.4 | GNU | Lib | X | ||||||
| Bowtie v 1.1.2, Ultrafast memory-efficient short read aligner | Bowtie v1 manual | bowtie/1.1.2 | GNU | Bio | X | ||||||
| Bowtie v 1.2.1, Ultrafast memory-efficient short read aligner | Bowtie v1 manual | bowtie/1.2.1 | GNU | Bio | X | ||||||
| Bowtie2 v 2.1.0, Ultrafast memory-efficient short read aligner | Bowtie2 manual | bowtie2/2.1.0/gcc | GNU | Bio | X | ||||||
| Bowtie2 v 2.3.2, Ultrafast memory-efficient short read aligner | Bowtie2 manual | bowtie2/2.3.2 | GNU | Bio | X | ||||||
| Bowtie2 v 2.3.3.1 Ultrafast memory-efficient short read aligner | Bowtie2 manual | bowtie2/2.3.3.1 | GNU | Bio | X | ||||||
| Cairo v 1.10.2, 2d vector graphics library | Cairo documentation page | cairo/1.10.2 | GNU | Graphics | X | ||||||
| Charm++ v 6.5.0, parallel object-oriented language based on C++ | Charm++ manual | charm/6.5.0/gcc | GNU | ModSim | X | ||||||
| Charm++ v 6.5.0, parallel object-oriented language based on C++ | Charm++ manual | charm/6.5.0/pgi | PGI | ModSim | X | ||||||
| Cheetah v 2.4.4, open-source template and code generation tool | Cheetah2 documentation | cheetah/2.4.4 | Developer | X | |||||||
| Circonspect v 0.2.6, Contig spectrum generator | Cironspect GitHub readme | circonspect/0.2.6 | Bio | X | |||||||
| Cloog-ppl v 0.15.11, Chunky loop generator for Z-polyhedra (with PPL as backend) | Cloog online manual | cloog-ppl/0.15.11 | GNU | MathStat | X | ||||||
| Cmake v 3.0.1, cross platform make | Cmake 3.0 docs | cmake/3.0.1 | GNU | Developer | X | X | |||||
| Cmake v 3.5.2, cross platform make | Cmake 3.5 docs | cmake/3.5.2 | GNU | Developer | X | ||||||
| Cmake v. 2.8.12.2, software building tool | Cmake 2.8.12 docs | cmake/2.8.12.2 | GNU | Developer | X | ||||||
| Cmake v. 3.7.2, software building tool | Cmake 3.7 docs | cmake/3.7.2 | Developer | X | X | X | |||||
| Cmake v. 3.9.2, software building tool | Cmake 3.9 docs | cmake/3.9.2 | GNU | Developer | |||||||
| Cmake v. 3.9.3, software building tool | Cmake 3.9 docs | cmake/3.9.3/gcc-4.9.4 | GNU | Developer | X | ||||||
| Coin v 3.1.3, OpenGL-based 3d graphics library | Coin 3.1.3 documentation | coin/3.1.3 | GNU | Graphics | X | ||||||
| Curl v 7.19.7, command line url fetcher | Curl homepage | curl/7.19.7 | GNU | Misc | X | ||||||
| Curl v 7.26.0, command line url fetcher | Curl homepage | curl/7.26.0 | GNU | Misc | X | ||||||
| Curl v 7.37.7, command line url fetcher | Curl homepage | curl/7.37.7 | GNU | Misc | X | ||||||
| Erkale v r1524, Quantum chemistry program for atoms, molecules and clusters | Erkale users guide | erkale/r1524/gcc | GNU | ModSim | X | ||||||
| Erkale v r1524, Quantum chemistry program for atoms, molecules and clusters | Erkale users guide | erkale/r1524/gcc-4.7.3 | GNU | ModSim | X | ||||||
| Exonerate v 2.2.0, general purpose sequence comparison tool | Exonerate homepage | exonerate/2.2.0 | GNU | Bio | X | ||||||
| FastLight ToolKit v 1.1.0, C++ GUI toolkit | FLTK docs | fltk/1.1.10 | GNU | UI | X | ||||||
| FastLight ToolKit v 1.3.2, C++ GUI toolkit | FLTK docs | fltk/1.3.2 | GNU | UI | X | ||||||
| Fastqc v 0.11.5, quality control tool for high throughput sequence data | FastQC homepage | fastqc/0.11.5 | GNU | Bio | X | ||||||
| FFmpeg v 2.3.2 multimedia framework for encoding/decoding video | Ffmpeg documentation page | ffmpeg/2.3.2 | GNU | Graphics | X | ||||||
| FFTW v 3.3.2 | FFTW home page | fftw/3.3.2/gcc | GNU | MathLib | X | ||||||
| FFTW v 3.3.3 | FFTW home page | fftw/3.3.3/gcc | GNU | MathLib | X | X | |||||
| FFTW v 3.3.3 | FFTW home page | fftw/3.3.3/pgi | PGI | MathLib | X | X | |||||
| FFTW v 3.3.3 | FFTW home page | fftw/3.3.3/intel | Intel | MathLib | X | ||||||
| FFTW v 3.3.6-pl1 | FFTW home page | fftw/3.3.6-pl1/intel | Intel | MathLib | |||||||
| FFTW v 3.3.6-pl2 | FFTW home page | fftw/3.3.6-pl2/gcc | GNU | MathLib | X | ||||||
| FFTW v 3.3.6-pl2 | FFTW home page | fftw/3.3.6-pl2/intel | Intel | MathLib | X | ||||||
| Framework in F# on top of selenium for writing UI automation | Canopy 1.4.0 homepage | canopy/1.4.0 | Developer | X | |||||||
| FreeGLUT v 2.8.0, Opensource alternative to GLUT | FreeGLUT user interface | freeglut/2.8.0/gcc | GNU | UI | X | ||||||
| GAAS v 0.17, Genome relative Abundance and Average Size bio tool | GAAS sourceforge readme | gaas/0.17 | Bio | X | |||||||
| Gaussian 09 | Local G09 docs | gaussian/g09 | GNU | ModSim | X | X | |||||
| Geant4 v 9.6.p02, high energy / particle physics toolkit | Geant4 documentation page | geant4/9.6.p02 | GNU | ModSim | X | ||||||
| Geometry Engine Open Source v 3.3.2 | GEOS homepage | geos/3.3.2 | GNU | Geo | X | X | |||||
| Geometry Engine Open Source v 3.4.2 | GEOS homepage | geos/3.4.2 | GNU | Geo | X | ||||||
| Geometry Engine Open Source v 3.5.0 | GEOS homepage | geos/3.5.0 | GNU | Geo | X | ||||||
| Geospatial Data Abstraction Layer v 1.11.0 | GDAL homepage | gdal/1.11.0 | GNU | Geo | X | ||||||
| Geospatial Data Abstraction Layer v 1.11.0 (compiled without GRASS interface) | GDAL homepage | gdal-nograss/1.11.0 | GNU | Geo | X | ||||||
| Geospatial Data Abstraction Layer v 1.11.2 (compiled without GRASS interface) | GDAL homepage | gdal-nograss/1.11.2 | GNU | Geo | X | X | |||||
| Geospatial Data Abstraction Layer v 1.9.0 | GDAL homepage | gdal/1.9.0 | GNU | Geo | X | ||||||
| Geospatial Data Abstraction Layer v 1.9.0 (compiled without GRASS interface) | GDAL homepage | gdal-nograss/1.9.0 | GNU | Geo | X | ||||||
| Geospatial Data Abstraction Layer v 2.2.0 | GDAL homepage | gdal/2.2.0 | GNU | Geo | X | ||||||
| Geospatial Data Abstraction Layer v 2.2.0 (compiled without GRASS interface) | GDAL homepage | gdal-nograss/2.2.0 | GNU | Geo | X | ||||||
| Gifsicle utility for making animated GIFS v 1.88 | Gifsicle homepage | gifsicle/1.88 | GNU | Graphics | X | X | |||||
| Git v 2.10.2, distributed version control software | Git 2.10.2 documentation | git/2.10.2 | Developer | X | |||||||
| Git v 2.11.0, distributed version control software | Git 2.11.0 documentation | git/2.11.0 | GNU | Developer | X | ||||||
| Glib v 2.14.6 GNOME and GTK library | Glib reference page | glib/2.14.6 | GNU | Lib | X | ||||||
| GNU Developer suite v 4.3.6 | GNU compiler documentation | gcc/4.3.6 | Developer | X | |||||||
| GNU Developer suite v 4.4.6 | GNU compiler documentation | gcc/4.4.6 | Developer | X | X | ||||||
| GNU Developer suite v 4.5.3 | GNU compiler documentation | gcc/4.5.3 | Developer | X | |||||||
| GNU Developer suite v 4.7.0 | GNU compiler documentation | gcc/4.7.0 | Developer | X (def) | X | ||||||
| GNU Developer suite v 4.7.3 | GNU compiler documentation | gcc/4.7.3 | Developer | X | X (def) | X (def) | X | ||||
| GNU Developer suite v 4.8.4 | GNU compiler documentation | gcc/4.8.4 | Developer | X | X | ||||||
| GNU Developer suite v 4.9.4 | GNU compiler documentation | gcc/4.9.4 | Developer | X (def) | |||||||
| GNU Developer suite v 5.2.0 | GNU compiler documentation | gcc/5.2.0 | Developer | X | X | X | |||||
| GNU Developer suite v 5.3.0 | GNU compiler documentation | gcc/5.3.0 | Developer | X | |||||||
| GNU Developer suite v 6.3.0 | GNU compiler documentation | gcc/6.3.0 | Developer | X (def) | |||||||
| GNU Developer suite v 7.2.0 | GNU compiler documentation | gcc/7.2.0 | Developer | X | |||||||
| GNU linear programming kit v 4.54 | GLPK documentation page | glpk/4.54 | GNU | MathStat | X | ||||||
| GNU Multiple Precision Library v 4.1.4 | GMP homepage | gmp/4.1.4 | GNU | MathLib | X | ||||||
| GNU Multiple Precision Library v 4.3.2 | GMP homepage | gmp/4.3.2 | GNU | MathLib | X | X | |||||
| GNU Multiple Precision Library v 6.00 | GMP homepage | gmp/6.0.0 | GNU | MathLib | X | ||||||
| GNU Multiple Precision Library v 6.12 | GMP homepage | gmp/6.1.2 | GNU | MathLib | X | ||||||
| GNU Scientific Library v 1.1.5 | GNU scientific library homepage | gsl/1.15/gcc | GNU | MathLib | X | X | |||||
| GNU Scientific Library v 1.9 | GNU scientific library homepage | gsl/1.9 | GNU | MathLib | X | ||||||
| GNU Scientific Library v 2.1 | GNU scientific library homepage | gsl/2.1 | GNU | MathLib | X | ||||||
| gotoblas2 1.13 | GotoBlas/OpenBlas documentation | gotoblas2/1.13/gcc | GNU | MathLib | X | X | X | ||||
| gotoblas2 1.13 | GotoBlas/OpenBlas documentation | gotoblas2/1.13/pgi | PGI | MathLib | X | X | X | ||||
| Graphics Magick v. 1.3.7, image processing system | Graphicsmagick docs page | grmagick/1.3.7 | GNU | Graphics | X | ||||||
| Graphviz v2.40.1, Open source graph visualization software | Graphviz documentation page | graphviz/2.40.1 | GNU | Graphics | X | ||||||
| Grass v 6.4.2, Geographic Resources Analysis support system | Grass 6.4 documentation | grass/6.4.2 | GNU | Geo | X | ||||||
| Grass v 6.4.3, Geographic Resources Analysis support system | Grass 6.4 documentation | grass/6.4.3 | GNU | Geo | X | ||||||
| Gurobi optimization software v 6.5.1 | Gurobi homepage | gurobi/6.5.1 | Optimization | X | X | ||||||
| Gurobi optimization software v 6.5.1 | Gurobi homepage | gurobi/6.5.1 | GNU | Optimization | X | ||||||
| Gurobi optimization software v 7.0.2 | Gurobi homepage | gurobi/7.0.2 | Optimization | X | X | ||||||
| H5py - python interface to HDF5 v 2.3.1 | H5py docs | h5py/2.3.1 | DataMgmt | X | |||||||
| Hierarchical data format 5 v 1.8.11 | HDF5 documentation | hdf5/1.8.11/gcc | GNU | DataMgmt | X | ||||||
| Hierarchical data format 5 v 1.8.11 | HDF5 documentation | hdf5/1.8.11/intel | Intel | DataMgmt | X | ||||||
| Hierarchical data format 5 v 1.8.11 | HDF5 documentation | hdf5/1.8.11/intel-2016 | Intel | DataMgmt | X | ||||||
| Hierarchical data format 5 v 1.8.11 | HDF5 documentation | hdf5/1.8.11/pgi | PGI | DataMgmt | X | ||||||
| Hierarchical data format 5 v 1.8.13 | HDF5 documentation | hdf5/1.8.13/gcc | GNU | DataMgmt | X | X | X | X | |||
| Hierarchical data format 5 v 1.8.13 | HDF5 documentation | hdf5/1.8.13/pgi | PGI | DataMgmt | X | X | X | ||||
| Hierarchical data format 5 v 1.8.13 | HDF5 documentation | hdf5/1.8.13/intel | Intel | DataMgmt | X | ||||||
| Hierarchical data format 5 v 1.8.18 | HDF5 documentation | hdf5/1.8.18/gcc | GNU | DataMgmt | X | ||||||
| Hierarchical data format 5 v 1.8.18 | HDF5 documentation | hdf5/1.8.18/intel | Intel | DataMgmt | X | ||||||
| Hierarchical data format 5 v 1.8.18 | HDF5 documentation | hdf5/1.8.18/intel-2016 | Intel | DataMgmt | X | ||||||
| Hierarchical data format 5 v 1.8.18 | HDF5 documentation | hdf5/1.8.18/pgi-17.3 | PGI | DataMgmt | X | ||||||
| Hierarchical data format v 4.2.10 | HDF4 documentation | hdf/4.2.10/gcc | GNU | DataMgmt | X | X | X | ||||
| Hierarchical data format v 4.2.10 | HDF4 documentation | hdf/4.2.10/pgi | PGI | DataMgmt | X | X | |||||
| Hierarchical data format v 4.2.10 | HDF4 documentation | hdf/4.2.10/intel | Intel | DataMgmt | X | X | |||||
| Hierarchical data format v 4.2.8 | HDF4 documentation | hdf/4.2.8/gcc | GNU | DataMgmt | X | ||||||
| Hierarchical data format v 4.2.8 | HDF4 documentation | hdf/4.2.8/pgi | PGI | DataMgmt | X | ||||||
| Hmmer v 3.1b2, tool for searching sequence databases for homologs | Hmmer guide | hmmer/3.1b2 | GNU | Bio | X | ||||||
| HTSlib v 1.5-20, library for common sequence file formats | HTSlib documentation | htslib/1.5-20 | GNU | Bio | X | ||||||
| Icorn v 0.97, aka ACORN software to correct ref. genome sequences | Icorn documentation page | icorn/0.97 | Bio | X | |||||||
| Intel MPI v 16.3.210 | Intel MPI developer guide | intel/mpi-2016 | Intel | MPI | X | ||||||
| Intel MPI v 17.0.098 | Intel MPI developer guide | intel/mpi | Intel | MPI | X | X | |||||
| Intel MPI v 17.0.098 | Intel MPI developer guide | intel/mpi-2017 | Intel | MPI | X | ||||||
| Intel MPI v 17.2.174 | Intel MPI developer guide | intel/mpi-2017 | Intel | MPI | X | ||||||
| Intel Parallel Studio XE 16.2.181 | Intel parallel studio XE doc homepage | intel/2016 | Developer | X | X | X | |||||
| Intel Parallel Studio XE 16.3.210 | Intel parallel studio XE doc homepage | intel/2016 | Developer | X | |||||||
| Intel Parallel Studio XE 17.0.098 | Intel parallel studio XE doc homepage | intel/2017 | Developer | X (def) | X (def) | X (def) | X (def) | ||||
| Intel Parallel Studio XE 17.2.174 | Intel parallel studio XE doc homepage | intel/2017 | Developer | X (def) | |||||||
| Jags (Just Another Gibbs Sampler) v 4.2.0 | Local user manual | jags/4.2.0 | GNU | ModSim | X | ||||||
| Java v 1.6.0_22 | Java SE 6 documentation | java/1.6.0_22 | Developer | X | |||||||
| Java v 1.7.0 | Java SE 7 documentation | java/1.7.0 | Developer | X | |||||||
| Java v 1.8.0 | Java SE 8 documentation | java/1.8.0 | Developer | X | |||||||
| Java v 1.8.0.45 | Java SE 8 documentation | jdk/1.8.0.45 | Developer | X | |||||||
| JPEG v 8d - Independent JPEG group software | Jpeg-8d github page | jpeg/8d | GNU | Graphics | X | ||||||
| Julia v 0.3.10, high level languange for numerical programming | Julia v 0.3 documentation | julia/0.3.10 | GNU | Developer | X | ||||||
| Lasange v 070915, lightweight library to train neural networks in Theano | Lasange manual | lasagne/070915 | GNU | Lib | X | ||||||
| Lesstif v 0.95.2, free version of Motif widgets | LessTif/Motif documentation | lesstif/0.95.2 | GNU | Graphics | X | X | |||||
| Libint v 2.0.3, high-performance library for Gaussian integrals | Libinit 2.0.3 manual | libint/2.0.3/gcc | GNU | MathLib | X | ||||||
| Libxc v 2.0.3, exchange-correlation functionals for DFT | LibXC wiki | libxc/2.0.3/gcc | GNU | Lib | X | ||||||
| Libxc v 2.2.0, exchange-correlation functionals for DFT | LibXC wiki | libxc/2.2.0/gcc | GNU | Lib | X | ||||||
| Libxc v 2.2.0, exchange-correlation functionals for DFT | LibXC wiki | libxc/2.2.0/gcc | GNU | Lib | X | ||||||
| Ligr_assemgler v 2.0.5, sequence assembly program | LIGR readme file | ligr_assembler/2.0.5 | Bio | X | |||||||
| LLVM Developer v 3.7.0 | LLVM docs page | llvm/3.7.0 | GNU | Developer | X | ||||||
| LLVM Developer v 3.7.0 | LLVM docs page | llvm/3.7.0 | GNU | Developer | X | ||||||
| LLVM Developer v 3.9.0 | LLVM docs page | llvm/3.9.0/intel | Intel | Developer | |||||||
| Maple v 2017.3 | Maple online help | maple/2017 | MathStat | X | |||||||
| Matlab Developer Runtime v R2012b | Matlab compiler webpage | mcr/R2012b | Developer | X | |||||||
| Matlab v R2016b | Matlab online manual/help | matlab/R2016b | GNU | ModSim | X | ||||||
| Matlab v R2017a | Matlab online manual/help | matlab/R2017a | MathStat | X | X | ||||||
| Matplotlib python module v 1.1.1 Python info | Matplotlib 1.4.3 guide (1.1.1 docs not available) | matplotlib/1.1.1 | GNU | Python | X | ||||||
| Matplotlib python module v 1.4.3 Python info | Matplotlib 1.4.3 guide | matplotlib/1.4.3 | GNU | Python | X | ||||||
| Maui scheduler | Maui documentation | maui/r156 | GNU | System | X | X | X | X | X | ||
| Maui scheduler v 3.2.6p21 | Maui documentation | maui/3.2.6p21 | GNU | System | X | ||||||
| Mcclintock v 20170908, pipeline for detecting transposable element insertions in genome data | Mcclintock github page | mcclintock/20170908 | GNU | Bio | X | ||||||
| MCT - model coupling toolkit v 2.8.3 | MCT homepage | mct/2.8.3/gcc | GNU | ModSim | X | ||||||
| MCT - model coupling toolkit v 2.8.3 | MCT homepage | mct/2.8.3/pgi | PGI | ModSim | X | ||||||
| Mercurial v 3.7.1, distributed source control management python module Python info | Mercurial online guide | mercurial/3.7.1 | Python | X | |||||||
| Methypy v 2013112, python based sequencing lib Python info | Methylpy wiki | methylpy/20131112 | Bio | X | |||||||
| MPC v 0.8.2, multiple precision library for complex values | MPC manual | mpc/0.8.2 | GNU | MathLib | X | ||||||
| MPFR v 2.4.2, Gnu multi-prec floating pointing library (w/ GMP 4.1.4) | MPFR 2.4.2 guide | mpfr/2.4.2 | GNU | MathLib | X | ||||||
| MPFR v 2.4.2a, Gnu multi-prec floating pointing library (w/ GMP 4.3.2) | MPFR 2.4.2 guide | mpfr/2.4.2a | GNU | MathLib | X | ||||||
| MPFR v 3.1.3, Gnu multi-prec floating pointing library | MPFR 3.13 guide | mpfr/3.1.3 | MathLib | X | |||||||
| Mummer v 3.23, rapid alignment of entire genomes | Mummer3 manual | mummer/3.23 | GNU | Bio | X | ||||||
| Mummer v 4.0.0b1, rapid alignment of entire genomes | Mummer v4 manual | mummer/4.0.0b1 | GNU | Bio | X | ||||||
| Mummer v 4.0.0b2, rapid alignment of entire genomes | Mummer v4 manual | mummer/4.0.0b2 | GNU | Bio | X | ||||||
| Mutliwell Suite v2017, Thermodynamics / Chemistry software | Multiwell homepage | multiwell-2017/gcc | GNU | ModSim | X | ||||||
| MVAPICH2 v 1.9 | MVAPICH2-1.9 users guide | mvapich2-ib/1.9/gcc | GNU | MPI | X | ||||||
| MVAPICH2 v 1.9 | MVAPICH2-1.9 users guide | mvapich2-ib/1.9/gcc-4.4.6 | GNU | MPI | X | ||||||
| MVAPICH2 v 1.9 | MVAPICH2-1.9 users guide | mvapich2-ib/1.9/pgi | PGI | MPI | X | ||||||
| MVAPICH2 v 1.9 | MVAPICH2-1.9 users guide | mvapich2-ib/1.9/pgi-11.10 | PGI | MPI | X | ||||||
| MVAPICH2 v 2.1a | MVAPICH2-2.1a users guide | mvapich2-ib/2.1a/pgi | PGI | MPI | X | ||||||
| MVAPICH2 v 2.1a | MVAPICH2-2.1a users guide | mvapich2-ib/2.1a/pgi-15.4 | PGI | MPI | X | ||||||
| MVAPICH2 v 2.2 | MVAPICH2-2.2 users guide | mvapich2/2.2/gcc-hfi | GNU | MPI | X | ||||||
| MVAPICH2 v 2.2 | MVAPICH2-2.2 users guide | mvapich2/2.2/intel-hfi | GNU | MPI | X | ||||||
| MVAPICH2 v 2.2 | MVAPICH2-2.2 users guide | mvapich2-ib/2.2/intel | Intel | MPI | X | X | X | ||||
| MVAPICH2 v 2.2 | MVAPICH2-2.2 users guide | mvapich2-ib/2.2/pgi-17.7 | PGI | MPI | X | X | X | ||||
| MVAPICH2 v 2.2 | MVAPICH2-2.2 users guide | mvapich2-ib/2.2/gcc-5.2.0 | GNU | MPI | X | X | |||||
| MVAPICH2 v 2.2 | MVAPICH2-2.2 users guide | openmpi/2.1.1/gcc-4.8.4 | GNU | MPI | X | X | |||||
| MVAPICH2 v 2.2 | MVAPICH2-2.2 users guide | mvapich2-ib/2.2/intel-2016 | Intel | MPI | X | ||||||
| MVAPICH2 v 2.2 | MVAPICH2-2.2 users guide | mvapich2-ib/2.2/gcc-4.9.4 | GNU | MPI | X | ||||||
| MVAPICH2 v 2.2 | MVAPICH2-2.2 users guide | mvapich2-ib/2.2/pgi | PGI | MPI | X | ||||||
| MVAPICH2 v 2.2 | MVAPICH2-2.2 users guide | mvapich2-ib/2.2/gcc-4.8.4 | GNU | MPI | |||||||
| MVAPICH2 v 2.2 | MVAPICH2-2.2 users guide | mvapich2-ib/2.2/gcc | GNU | MPI | |||||||
| MVAPICH2 v 2.2 for TotalView | MVAPICH2-2.2 users guide | mvapich2-tv-ib/2.2/gcc-5.2.0 | GNU | MPI | X | ||||||
| MVAPICH2 v 2.2 for TotalView | MVAPICH2-2.2 users guide | mvapich2-tv-ib/2.2/intel | Intel | MPI | X | ||||||
| MVAPICH2 v 2.2 for TotalView | MVAPICH2-2.2 users guide | mvapich2-tv-ib/2.2/pgi-17.7 | PGI | MPI | X | ||||||
| MVAPICH2 v 2.2 for TotalView | MVAPICH2-2.2 users guide | mvapich2-tv-ib/2.2/intel-2016 | Intel | MPI | X | ||||||
| ncbi-blast v 2.2.28+, BLAST tool | NCBI-BLAST help page | ncbi-blast/2.2.28+ | GNU | Bio | X | ||||||
| ncbi-blast v 2.3.0, BLAST tool | NCBI-BLAST help page | blast/2.3.0 | GNU | Bio | X | ||||||
| ncbi-blast v 2.6.0, BLAST tool | NCBI-BLAST help page | blast/2.6.0 | GNU | Bio | X | ||||||
| ncl v 6.3.0 NCAR command language | NCL documentation | ncl/6.3.0 | Bio | X | |||||||
| ncl-ncarg v 5.2.1 NCAR command language | NCL documentation | ncl-ncarg/5.2.1 | GNU | Bio | X | ||||||
| NetCDF compare v 1.8.0.0 | NetCDF compare homepage | nccmp/1.8.0.0 | GNU | DataMgmt | X | ||||||
| NetCDF compare v 1.8.2.1 | NetCDF compare homepage | nccmp/1.8.2.1 | GNU | DataMgmt | X | ||||||
| NetCDF operators v 4.4.4 | NetCDF opterators homepage | nco/4.4.4 | GNU | DataMgmt | X | X | |||||
| NetCDF v 3.6.2 | NetCDF 3.6.2 documentation | netcdf/3.6.2/pgi | PGI | DataMgmt | X | X | |||||
| NetCDF v 3.6.2 | NetCDF 3.6.2 documentation | netcdf/3.6.2/gcc | GNU | DataMgmt | X | ||||||
| NetCDF v 3.6.3 | NetCDF 3.6.3 documentation | netcdf/3.6.3/gcc | GNU | DataMgmt | X | X | X | X | X | ||
| NetCDF v 3.6.3 | NetCDF 3.6.3 documentation | netcdf/3.6.3/pgi | PGI | DataMgmt | X | X | X | X | |||
| NetCDF v 3.6.3 | NetCDF 3.6.3 documentation | netcdf/3.6.3/pgi-11.10 | PGI | DataMgmt | X | X | |||||
| NetCDF v 3.6.3 | NetCDF 3.6.3 documentation | netcdf/3.6.3/pgi-15.4 | PGI | DataMgmt | X | ||||||
| NetCDF v 3.6.3 | NetCDF 3.6.3 documentation | netcdf/3.6.3/intel | Intel | DataMgmt | X | X | X | X | X | ||
| NetCDF v 3.6.3 | NetCDF 3.6.3 documentation | netcdf/3.6.3/gcc-5.2.0 | GNU | DataMgmt | X | X | |||||
| NetCDF v 3.6.3 | NetCDF 3.6.3 documentation | netcdf/3.6.3/pgi-16.3 | PGI | DataMgmt | X | ||||||
| NetCDF v 3.6.3 | NetCDF 3.6.3 documentation | netcdf/3.6.3/intel-2016 | Intel | DataMgmt | X | X | |||||
| NetCDF v 3.6.3 | NetCDF 3.6.3 documentation | netcdf/3.6.3/gcc-4.9.4 | GNU | DataMgmt | X | ||||||
| NetCDF v 4.2-fortran | NetCDF users guide | netcdf/fortran-4.2/gcc | GNU | DataMgmt | X | X | X | ||||
| NetCDF v 4.2-fortran | NetCDF users guide | netcdf/fortran-4.2/pgi | PGI | DataMgmt | X | ||||||
| NetCDF v 4.2-fortran | NetCDF users guide | netcdf/4.2-fortran/pgi | PGI | DataMgmt | X | X | X | ||||
| NetCDF v 4.2-fortran | NetCDF users guide | netcdf/4.2-fortran/intel | Intel | DataMgmt | X | X | |||||
| NetCDF v 4.2-fortran | NetCDF users guide | netcdf/4.2-fortran/intel-2016 | Intel | DataMgmt | X | ||||||
| NetCDF v 4.4.4-fortran | NetCDF users guide | netcdf/fortran-4.4.4/gcc | GNU | DataMgmt | X | ||||||
| NetCDF v 4.4.4-fortran | NetCDF users guide | netcdf/fortran-4.4.4/pgi | PGI | DataMgmt | X | ||||||
| NetCDF v 4.4.4-fortran | NetCDF users guide | netcdf/fortran-4.4.4/intel | Intel | DataMgmt | X | ||||||
| NetCDF v 4.4.4-fortran | NetCDF users guide | netcdf/fortran-4.4.4/intel-2016 | Intel | DataMgmt | X | ||||||
| NetCDF v 4.4.4-fortran | NetCDF users guide | netcdf/fortran-4.4.4/pgi-17.3 | PGI | DataMgmt | X | ||||||
| NetCDF v4-4.2.1-cxx | NetCDF users guide | netcdf/cxx4-4.2.1/gcc | GNU | DataMgmt | X | X | X | ||||
| NetCDF v4-4.2.1-cxx | NetCDF users guide | netcdf/cxx4-4.2.1/pgi | PGI | DataMgmt | X | X | X | ||||
| NetCDF v4.3.0 | NetCDF users guide | netcdf/4.3.0/pgi | PGI | DataMgmt | |||||||
| NetCDF v4.3.2 | NetCDF users guide | netcdf/4.3.2/gcc | GNU | DataMgmt | X | X | X | X | |||
| NetCDF v4.3.2 | NetCDF users guide | netcdf/4.3.2/pgi | PGI | DataMgmt | X | X | X | X | |||
| NetCDF v4.3.2 | NetCDF users guide | netcdf/4.3.2/intel | Intel | DataMgmt | X | X | |||||
| NetCDF v4.3.2 | NetCDF users guide | netcdf/4.3.2/intel-2016 | Intel | DataMgmt | X | ||||||
| NetCDF v4.4.1.1 | NetCDF users guide | netcdf/4.4.1.1/gcc | GNU | DataMgmt | X | ||||||
| NetCDF v4.4.1.1 | NetCDF users guide | netcdf/4.4.1.1/pgi | PGI | DataMgmt | X | ||||||
| NetCDF v4.4.1.1 | NetCDF users guide | netcdf/4.4.1.1/intel | Intel | DataMgmt | X | ||||||
| NetCDF v4.4.1.1 | NetCDF users guide | netcdf/4.4.1.1/intel-2016 | Intel | DataMgmt | X | ||||||
| NetCDF v4.4.1.1 | NetCDF users guide | netcdf/4.4.1.1/pgi-17.3 | PGI | DataMgmt | X | ||||||
| NetCDF viewer v 2.1.2 | NetCDF viewer homepage | ncview/2.1.2 | GNU | DataMgmt | X | X | |||||
| Newbler v 2.9, de nova DNA sequence assembly | Local newbler documentation | newbler/2.9 | Bio | X | X | ||||||
| Newbler v 2.9, de nova DNA sequence assembly | Local newbler documentation | newbler/2.9 | GNU | Bio | X | ||||||
| Numerical Python v 1.3.0 Python info | Numpy 1.3 reference | numpy/1.3.0 | GNU | Python | X | ||||||
| Numerical Python v 1.6.0 Python info | Numpy 1.6 reference | numpy/1.6.0 | GNU | Python | X | ||||||
| Numerical Python v 1.8.1 Python info | NumPy 1.8.1 reference | numpy/1.8.1 | GNU | Python | X | X | |||||
| Numerical Python v 1.9.2 Python info | NumPy 1.9 guide | numpy/1.9.2 | GNU | Python | X | ||||||
| Numerical Python v 1.9.2 Python info | NumPy 1.9.2 reference | numpy/1.9.2 | GNU | Python | X | ||||||
| Numerical Python v 1.9.2 Python info | NumPy 1.9.2 reference | numpy/1.9.2 | GNU | Python | X | ||||||
| NWCHEM v 6.3, PNNL DFT and QM suite | NWCHEM documentation page | nwchem/6.3 | GNU | ModSim | X | ||||||
| Octave v 3.6.2 Open-source matlab alternative | Octave manual | octave/3.6.2 | GNU | ModSim | X | ||||||
| Octave v 3.8.1 Open-source matlab alternative | Octave manual | octave/3.8.1 | GNU | ModSim | X | ||||||
| OpenCV v 2.4.11, Open-source computer vision library | OpenCV documentation | opencv/2.4.11 | GNU | ModSim | X | ||||||
| OpenCV v 3.3.1, Open-source computer vision library | OpenCV 3.3.1 manual | opencv/3.3.1/gcc-4.9.4 | GNU | Lib | X | ||||||
| OpenMPI v 1.10.0 | OpenMPI 1.10 user docs | openmpi-ib/1.10.0/gcc | GNU | MPI | X | ||||||
| OpenMPI v 1.10.0 | OpenMPI 1.10 user docs | openmpi-ib/1.10.6/gcc | GNU | MPI | X | ||||||
| OpenMPI v 1.10.0 | OpenMPI 1.10 user docs | openmpi-ib/1.10.6/pgi | PGI | MPI | X | ||||||
| OpenMPI v 2.1.1 | OpenMPI 2.1 users docs | openmpi/2.1.1/gcc-hfi | GNU | MPI | X | ||||||
| OpenMPI v 2.1.1 | OpenMPI 2.1 users docs | openmpi/2.1.1/intel-hfi | GNU | MPI | X | ||||||
| OpenMPI v 2.1.1 | OpenMPI 2.1 users docs | openmpi/2.1.1/intel | Intel | MPI | X | X | X | ||||
| OpenMPI v 2.1.1 | OpenMPI 2.1 users docs | openmpi/2.1.1/pgi-17.7 | PGI | MPI | X | X | X | ||||
| OpenMPI v 2.1.1 | OpenMPI 2.1 users docs | openmpi/2.1.1/gcc-5.2.0 | GNU | MPI | X | X | |||||
| OpenMPI v 2.1.1 | OpenMPI 2.1 users docs | openmpi-ib/2.1.1/gcc | GNU | MPI | X | ||||||
| OpenMPI v 2.1.1 | OpenMPI 2.1 users docs | openmpi-ib/2.1.1/gcc-5.2.0 | GNU | MPI | X | ||||||
| OpenMPI v 2.1.1 | OpenMPI 2.1 users docs | openmpi-ib/2.1.1/intel | Intel | MPI | X | ||||||
| OpenMPI v 2.1.1 | OpenMPI 2.1 users docs | openmpi-ib/2.1.1/pgi-17.7 | PGI | MPI | X | ||||||
| OpenMPI v 2.1.1 | OpenMPI 2.1 users docs | openmpi/2.1.1/intel-2016 | Intel | MPI | X | X | |||||
| OpenMPI v 2.1.1 | OpenMPI 2.1 users docs | openmpi/2.1.1/gcc-4.9.4 | GNU | MPI | X | ||||||
| OpenMPI v 2.1.1 for TotalView | OpenMPI 2.1 users docs | openmpi-tv-ib/2.1.1/intel | Intel | MPI | X | ||||||
| Parma Polyhedra Library v. 0.11.1 | PPL 0.11.1 users guide | ppl/0.11.1 | GNU | Lib | X | ||||||
| PCRE - Perl compatible regular expressions | PCRE homepage | pcre/8.35 | GNU | Developer | X | ||||||
| Perl v 5.26.0, the PERL programming language | Perl homepage | perl/5.26.0 | GNU | Developer | X | ||||||
| PETSc v 3.7.4, Scalable parallel structures and libs | PETSc homepage | petsc/3.7.4/openmpi-2.1.1_intel | Intel | Developer | X | X | X | X | |||
| PETSc v 3.7.4, Scalable parallel structures and libs | PETSc homepage | petsc/3.7.4/mvapich2-2.2_intel | Intel | Developer | X | X | |||||
| PETSc v 3.7.4, Scalable parallel structures and libs | PETSc homepage | petsc/3.7.4/openmpi-2.1.1_gcc-4.8.4 | GNU | Developer | X | X | |||||
| PETSc v 3.7.4, Scalable parallel structures and libs | PETSc homepage | petsc/3.7.4/openmpi-2.1.1_gcc-5.2.0 | GNU | Developer | X | X | |||||
| PETSc v 3.7.4, Scalable parallel structures and libs | PETSc homepage | petsc/3.7.4/openmpi-2.1.1_pgi-17.7 | PGI | Developer | X | X | |||||
| PETSc v 3.7.4, Scalable parallel structures and libs | PETSc homepage | petsc/3.7.4/openmpi-2.1.1_intel-2016 | Intel | Developer | X | X | |||||
| PETSc v 3.7.4, Scalable parallel structures and libs | PETSc homepage | petsc/3.7.4/mvapich2-2.2_gcc | GNU | Developer | X | ||||||
| PETSc v 3.7.4, Scalable parallel structures and libs | PETSc homepage | petsc/3.7.4/mvapich2-2.2_pgi-17.7 | PGI | Developer | X | ||||||
| PETSc v 3.7.4, Scalable parallel structures and libs | PETSc homepage | petsc/3.7.4/openmpi-2.1.1_gcc-4.9.4 | GNU | Developer | X | ||||||
| PETSc v 3.7.4, Scalable parallel structures and libs | PETSc homepage | petsc/3.7.4/openmpi-2.1.1_pgi-17.7 | PGI | Developer | |||||||
| Phonopy v 1.9.0.1, phonon analysis software for VASP and QE | Phonopy homepage | phonopy/1.9.0.1 | GNU | ModSim | X | ||||||
| Pixman v. 0.24.0, low-level library for pixel manipulation | Pixman homepage | pixman/0.24.0 | GNU | Graphics | X | ||||||
| Portland Group compiler suiite v 11.10 | PGI compiler documentation | pgi/11.10 | Developer | X (def) | X | X | |||||
| Portland Group compiler suite v 14.3 | PGI compiler documentation | pgi/14.3 | Developer | X | X (def) | X (def) | X | ||||
| Portland Group compiler suite v 15.4 | PGI compiler documentation | pgi/15.4 | Developer | X | |||||||
| Portland Group compiler suite v 16.3 | PGI compiler documentation | pgi/16.3 | Developer | X (def) | X | ||||||
| Portland Group compiler suite v 17.3 | PGI compiler documentation | pgi/17.3 | Developer | X | |||||||
| Portland Group compiler suite v 17.7 | PGI compiler documentation | pgi/17.7 | Developer | X | X | X | X | ||||
| Portland Group compiler suite v 8.06 | PGI compiler documentation | pgi/8.06 | Developer | X | |||||||
| PostgreSQL v 10.2, database software | PostgreSQL 10 documentation | postgres/10.2 | GNU | DataMgmt | X | ||||||
| PostgreSQL v 9.1.4, database software | PostgreSQL 9.1 documentation | postgresql/9.1.4 | GNU | DataMgmt | X | ||||||
| PostgreSQL v 9.4.3, database software | PostgreSQL 9.4 documentation | postgresql/9.4.3 | Database | X | X | ||||||
| Proj v 4.7.0, Cartographic projection software | Proj homepage | proj/4.7.0 | GNU | Geo | X | X | |||||
| Proj v 4.8.0, Cartographic projection software | Proj homepage | proj/4.8.0 | Geo | X | |||||||
| Protobuf v. 2.6.1, protocol buffers - Google data interchange format software | Protocol buffers homepage | protobuf/2.6.1 | GNU | Graphics | X | ||||||
| Psycopg2 v 2.5, PostgresSQL with python | Psychopg2 2.5 documentation | psycopg2/2.5 | GNU | DataMgmt | X | ||||||
| Pyscf v 1.2.2, python based chemistry simulations module Python info | Pyscf homepage | pyscf/1.2.2 | ModSim | X | |||||||
| Pyscf v 1.4b, python based chemistry simulations module Python info | Pyscf homepage | pyscf/1.4b | ModSim | X | |||||||
| Python 2.6.6Python info | Python 2.6.6 documentation | python/2.6.6 | GNU | Developer | X | ||||||
| Python 2.7.11 Python info | Python 2.7.11 documentation | python/2.7.11 | GNU | Developer | X | X | |||||
| Python 2.7.13 Python info | Python 2.7.13 documentation | python/2.7.13 | GNU | Python | X | ||||||
| Python 2.7.13 Python info | Python 2.7.13 documentation | python/2.7.13/gcc-4.9.4 | GNU | Python | X | ||||||
| Python 2.7.13 Python info | Python 2.7.13 documentation | python/2.7.13/intel | Intel | Python | X | ||||||
| Python 2.7.2 Python info | Python 2.7.2 documentation | python/2.7.2 | GNU | Python | X | ||||||
| Python 2.7.5 Python info | Python 2.7.5 documentation | python/2.7.5/gcc | GNU | Python | X | ||||||
| Python 2.7.8 Python info | Python 2.7.8 documentation | python/2.7.8 | GNU | Python | X | ||||||
| Python 3.4.5 Python info | Python 3.4.5 documentation | python/3.4.5 | GNU | Python | X | ||||||
| Python 3.5.3 Python info | Python 3.5.3 documentation | python/3.5.3/intel | Intel | Python | X | X | |||||
| Python Imaging Library v 1.1.7 | PIL handbook | pil/1.1.7 | GNU | ModSim | X | ||||||
| Python interface to HDF4 | PyHDF homepage | pyhdf/0.8.3 | GNU | DataMgmt | X | ||||||
| Qhull v 2012.1, Convex hull software | Qhull homepage | qhull/2012.1/gcc | GNU | ModSim | X | ||||||
| Qhull v 2012.1, Convex hull software | Qhull homepage | qhull/2012.1/pgi | PGI | ModSim | X | ||||||
| QRupdate - Fortran library for fast updates of QR and Cholesky decomp. | Qrupdate sourceforge page | qrupdate/1.1.2 | GNU | MathLib | X | ||||||
| Qt v 4.6.4, Cross platform application framework | Qt v4.6 documentation | qt/4.6.4 | GNU | UI | X | ||||||
| Qt v 5.9.1, Cross platform application framework | Qt v5.9 documentation | qt/5.9.1 | GNU | UI | X | ||||||
| Quantum Espresso v 6.1 | Quantum Espresso homepage | espresso/6.1/intel | Intel | ModSim | X | X | X | X | |||
| R v 3.1.0 statistical computing - compiled with ACML | R project homepage | r/3.1.0-acml | GNU | MathStat | X | X | |||||
| R v 3.1.0, statistical computing | R project homepage | r/3.1.0 | GNU | MathStat | X | X | X | X | |||
| R v 3.2.1 statistical computing | R project homepage | r/3.2.1 | GNU | MathStat | X | X | X | ||||
| R v 3.2.1 statistical computing | R project homepage | r/3.2.1-gcc484 | GNU | MathStat | X | ||||||
| R v 3.2.5 statistical computing | R project homepage | r/3.2.5 | GNU | MathStat | X | X | |||||
| R v 3.4.0 statistical computing | R project homepage | r/3.4.0 | GNU | MathStat | X | X | X | ||||
| R v 3.4.0 statistical computing | R project homepage | r/3.4.0/gcc | GNU | MathStat | X | ||||||
| R v 3.4.0 statistical computing | R project homepage | r/3.4.0/intel | GNU | MathStat | X | ||||||
| R v 3.4.0, statistical computing | R project homepage | r/3.4.0 | GNU | MathStat | X | X | |||||
| Repeatmasker v 4-0-7, scans sequences for interspersed repeats | Repeatmasker homepage | repeatmasker/4-0-7 | GNU | Bio | X | ||||||
| Rmblast v 2.6.0, repeatmaker compatible version of BLAST | RMBlast homepage | rmblast/2.6.0 | GNU | Bio | X | ||||||
| Root v 5.34.10 Data analysis framework | Root v5 manual | root/5.34.10 | GNU | ModSim | X | ||||||
| Ruby programming language v 2.4.1 | Ruby 2.4.1 docs | ruby/2.4.1 | Developer | X | |||||||
| Rust v 1.18.0, systems programming language | Rust documentation page | rust/1.18.0 | GNU | Developer | X | ||||||
| Sage v 5.1, open-source mathematical software | Sage support and documentation page | sage/5.1 | GNU | MathStat | X | ||||||
| Samtools v 0.1.19, Sequence alignment/map tools | HTSlib page | samtools/0.1.19/gcc | GNU | Bio | X | X | |||||
| Samtools v 1.5, Sequence alignment/map tools | HTSlib page | samtools/1.5 | GNU | Bio | X | ||||||
| Scalable Parallel Random Number Generators Library v 2.0 | SPRNG homepage | sprng-2.0/intel | Intel | MathLib | X | X | X | ||||
| Scalable Parallel Random Number Generators Library v 2.0 | SPRNG homepage | sprng-2.0/gcc | GNU | MathLib | |||||||
| Scientific Python v 0.10.1 Python info | SciPy 0.15.1 reference | scipy/0.10.1 | GNU | Python | X | ||||||
| Scientific Python v 0.12.0 Python info | SciPy 0.12.1 reference | scipy/0.12.0 | GNU | Python | X | ||||||
| Scientific Python v 0.14.0 Python info | SciPy 0.14.0 reference | scipy/0.14.0 | GNU | Python | X | X | |||||
| Scientific Python v 0.15.1 Python info | SciPy 0.15.1 guide | scipy/0.15.1 | GNU | Python | X | ||||||
| Scientific Python v 0.15.1 Python info | SciPy 0.15.1 reference | scipy/0.15.1 | GNU | Python | X | ||||||
| Scikit-image python module v 0.11 Python info | SciKit-image 0.11 documentation | skimage/0.11 | GNU | Python | X | ||||||
| Scikit-learn python module v 0.16.1 Python info | SciKit-learn 0.16 documenation | sklearn/0.16.1 | GNU | Python | X | ||||||
| Scons v 2.4.1, software construction tool (python based) Python info | Scons homepage | scons/2.4.1 | Python | X | |||||||
| SoQt v 1.5.0, Qt GUI toolkit for Coin | SoQt documentation page | soqt/1.5.0 | GNU | UI | X | ||||||
| SRAtoolkit v 2.8.2-1, sequence reading toolkit | SRAtoolkit overview | sratoolkit/2.8.2-1 | GNU | Bio | X | ||||||
| Stacks - software pipeline for building loci from short-read sequences v 1.46 | Stacks homepage | stacks/1.46 | GNU | Bio | X | ||||||
| Stata v 14.1, statisical software (only 2 unique users can use at one time) | Stata 14 users guide | stata/14.1 | MathStat | X | |||||||
| Subversion v 1.7.6, version control software | Subversion 1.7 docs | subversion/1.7.6 | Developer | X | X | ||||||
| Subversion v 1.9.5, version control software | Subversion 1.9 docs | subversion/1.9.5 | GNU | Developer | X | ||||||
| Suitesparse v 3.7.1, a collection of sparse matrix libraries | Suitesparse github page | suitesparse/3.7.1/gcc | GNU | MathStat | X | ||||||
| Suitesparse v 3.7.1, a collection of sparse matrix libraries | Suitesparse github page | suitesparse/3.7.1/pgi | PGI | MathStat | X | ||||||
| Texinfo v 4.13, the GNU documentation format | Texinfo manual | texinfo/4.13 | GNU | Doc | X | ||||||
| Texlive v2017, latex and xetex software | Texlive manual | texlive/2017 | GNU | Doc | X | ||||||
| Theano v 0.8.2, Python library for efficient multi-dim arrays Python info | Theano 0.8 documenation page | theano/0.8.2 | GNU | Python | X | ||||||
| Torque batch system | Torque documentation | torque/6.1.1.1 | GNU | System | X | X | X | X | X | ||
| Torque batch system v 5.1.2 | Torque documentation | torque/5.1.2 | System | X | |||||||
| Totalview v 8.15.7 debugging software for serial or parallel/MPI code | Totalview 8.15 guide | totalview/8.15.7 | Developer | X | X | ||||||
| TrimGalore! - A wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files - v 0.4.1 | TrimGalore users guide | trim_galore/0.4.1 | Bio | X | |||||||
| Trinity v 2.2.0, RNA-Seq de novo transcription assembly | Trinity users guide | trinity/2.2.0 | Bio | X | |||||||
| Trinity v 2.4.0, RNA-Seq de novo transcription assembly | Trinity users guide | trinity/2.4.0 | GNU | Bio | X | ||||||
| Udunits v 2.2.16 provides physical units bindings | Udunits2 guide | udunits/2.2.16/gcc | GNU | DataMgmt | X | X | |||||
| Udunits v 2.2.16 provides physical units bindings | Udunits2 guide | udunits/2.2.16/pgi | PGI | DataMgmt | X | X | |||||
| Udunits v 2.2.24 provides physical units bindings | Udunits2 guide | udunits/2.2.24/gcc | GNU | DataMgmt | X | ||||||
| Udunits v 2.2.24 provides physical units bindings | Udunits2 guide | udunits/2.2.24/pgi | PGI | DataMgmt | X | ||||||
| Valgrind v 3.12.0, Instrumentation framework / memory analysis tool | Valgrind user manual | valgrind/3.12.0/gcc | GNU | Developer | X | X | |||||
| Valgrind v 3.6.0, Instrumentation framework / memory analysis tool | Valgrind user manual | valgrind/3.6.0 | GNU | Developer | X | ||||||
| VASP v 5.3, Vienna Ab-initio Simulation Package | VASP user manual | vasp/5.3 | PGI | ModSim | X | X | |||||
| Vcftools v 0.1.15, utility for working with VCF files | VCFtools manual page | vcftools/0.1.15 | GNU | Bio | X | ||||||
| VISIT v 2.12.3, visulation software and interface | Visit homepage | visit/2.12.3 | GNU | Graphics | X | ||||||
| VTK v 5.10.0, Visualization tool kit | VTK 5.10.0 documentation | vtk/5.10.0 | GNU | Graphics | X | ||||||
| Wannier90 v 1.2, Wannier function software for VASP and QE | Wannier90 users guide | wannier90/intel/1.2 | GNU | ModSim | X | ||||||
| Wannier90 v 2.1.0, Wannier function software for VASP and QE | Wannier90 users guide | wannier90/gcc/2.1.0 | GNU | ModSim | X | ||||||
| Wannier90 v 2.1.0, Wannier function software for VASP and QE | Wannier90 users guide | wannier90/pgi/2.1.0 | PGI | ModSim | X | ||||||
| Wannier90 v 2.1.0, Wannier function software for VASP and QE | Wannier90 users guide | wannier90/intel/2.1.0 | GNU | ModSim | X | ||||||
| wxPython module v. 2.8.12 Python info | wxPython wiki | wxpython/2.8.12.1 | GNU | Python | X | X | |||||
| Xerces-c v 3.1.1, C++ XML parser | Xerces-c homepage | xerces-c/3.1.1/gcc | GNU | Lib | X | ||||||
| Yasm - complete rewrite of the Netwide Assembler (NASM) - v 1.3.0 | YASM homepage | yasm/1.3.0 | GNU | Developer | X |