Pamunkey Bioninformatics Software
Pamunkey Bioninformatics Software Table
| Name | URL |
|---|
| Archaeopteryx | |
| biopython v.1.66 | |
| bedtools v.2.27.1 | |
| blast2 v.2.2.25 | |
| bowtie v.1.1.2 | |
| BTLib v.0.19 | |
| bwa v.0.7.15-r1142 | |
| clearcut v.1.0.9 | |
| clustalw v.2.1 | |
| cufflinks v.2.2.1 | |
| dDocent v.2.2.15 | |
| dendroscope=3.5.7 | |
| EMIRGE | |
| fasta v.36.3.8d | |
| fastqc v.0.11.5 | |
| fastStructure | |
| fasttree v.2.1.9 | |
| fastx-toolkit | |
| freebayes v.1.0.2 | |
| hmmer v.3.1b2 | |
| jellyfish v.2.2.6 | |
| JProfileGrid v.2.0.5 | |
| last-align | |
| lastz v.1.02.00 | |
| mesquite v.3.1.0 | |
| metaxa2 v.2.1 | |
| metaphlan2 v.2.5.0 | |
| metavelvetg v.1.2.02 | |
| mira-3rdparty v.4.0.2 | |
| mira-assembler v.4.0.2 | |
| mothur v.1.38.1 | |
| mothur-lookup-files | |
| MrBayes v3.2.6 | |
| multiqc v.1.4 | |
| mummer v.3.23 | |
| muscle v.3.8.31 | |
| mview v.1.60 | |
| ncbi-blast+ v.0.2.5 | |
| ncbi-blast+-legacy | |
| phyml v.20120412 | |
| picard-tools | |
| quast v.5.0.0 | |
| rainbow v.2.0.4 | |
| rdp-classifier v.2.11 | |
| readseq v.2.1.30 | |
| samtools v.1.3.1 | |
| SPAdes v.3.11.1 | |
| structure v.2.3.4 | |
| scons v.2.5.0 | |
| trimmomatic v.0.36 | |
| Xander_assembler | |
| seqprep | |
| sickle v.1.33 | |
| sortmerna v.2.1b | |
| splitstree4 | |
| ssake v..3.8.4 | |
| usearch v.9.1.13 | |
| velvet v.1.2.10 | |
| velvet-long v.1.2.10 | |
| vsearch v.2.3.4 | |
| wgsim v.0.3.1-r13 | |